{"id":23,"date":"2023-08-21T12:52:11","date_gmt":"2023-08-21T19:52:11","guid":{"rendered":"https:\/\/labs.wsu.edu\/griswold-lab\/?page_id=23"},"modified":"2025-04-17T10:22:53","modified_gmt":"2025-04-17T17:22:53","slug":"genechip-data","status":"publish","type":"page","link":"https:\/\/labs.wsu.edu\/griswold-lab\/genechip-data\/","title":{"rendered":"GeneChip Data"},"content":{"rendered":"\n<h1 class=\"wp-block-heading\">Affymetrix GeneChip Data<\/h1>\n\n\n\n<p>The data files are in an Excel spreadsheet format and provide all data obtained from Microarray Suite (MAS) 5.0 (Affymetrix) analysis. Experiment information and description of MAS 5.0 results can be found by downloading PDF files available on this page. If you do not have Adobe Acrobat, please follow this link to obtain it.<\/p>\n\n\n\n<p>If you are a collaborator looking for our Microarray Sample Guidelines and Form, <a href=\"https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3330\/2023\/08\/sample_form.pdf\">please follow this&nbsp;link<\/a>. (Form updated March 2010. *Please be sure you are sending samples to our Biotech\/Lifesciences address.)<\/p>\n\n\n\n<p>Below are two links to PDF files published by Affymetrix describing the statistical analysis of the data obtained from their GeneChip system. You can also follow this link to&nbsp;<a href=\"http:\/\/www.affymetrix.com\/\">Affymetrix&#8217;s website<\/a>&nbsp;to gain further information about the company, Microarray Suite, and the GeneChip system.<\/p>\n\n\n\n<ul>\n<li><a href=\"https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3330\/2023\/08\/statistical_algorithms_technote.pdf\">Statistical Algorithms Technote<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3330\/2023\/08\/statistical_reference_guide.pdf\">Statistical Algorithms Reference Guide<\/a><\/li>\n<\/ul>\n\n\n\n<p>Please <a href=\"mailto:mgriswold@vetmed.wsu.edu\">email Michael Griswold<\/a> if you have difficulty downloading files or have questions regarding the experiments.<\/p>\n\n\n\n<h2 class=\"wp-block-heading\">Experiment List<\/h2>\n\n\n\n<h3 class=\"wp-block-heading\">Testis Development<\/h3>\n\n\n\n<p><strong>Mouse Wild-Type Testis Development<\/strong> &#8211; Excel documents<\/p>\n\n\n\n<ul>\n<li><a href=\"https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3330\/2023\/08\/testis_dev_cluster_data.xls\">Cluster Data<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3330\/2023\/08\/testis_somatic_cell_isolated_transcripts-.xls\">Cell Type Data: Somatic Cell Enriched\/Specific<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3330\/2023\/08\/testis_germ_cell_isolated_transcripts.xls\">Cell Type Data: Germ Cell Enriched\/Specific<\/a><\/li>\n<\/ul>\n\n\n\n<h3 class=\"wp-block-heading\">Rat Sertoli Cell Data<\/h3>\n\n\n\n<p><strong>Rat FSH-Treated Sertoli Cell<\/strong> &#8211; Excel documents<\/p>\n\n\n\n<ul>\n<li><a href=\"https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3330\/2023\/08\/ratsertolitime0rep1.xls\">Rat Sertoli Cell time 0, rep #1<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3330\/2023\/08\/ratsertolitime0rep2.xls\">Rat Sertoli Cell time 0, rep #2<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3330\/2023\/08\/ratsertolitime2hrvstime0rep1.xls\">Rat Sertoli Cell time 2 vs. time 0, rep #1<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3330\/2023\/08\/ratsertolitime2hrvstime0rep2.xls\">Rat Sertoli Cell time 2 vs. time 0, rep #2<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3330\/2023\/08\/ratsertolitime4hrvstime0rep1.xls\">Rat Sertoli Cell time 4 vs. time 0, rep #1<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3330\/2023\/08\/ratsertolitime4hrvstime0rep2.xls\">Rat Sertoli Cell time 4 vs. time 0, rep #2<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3330\/2023\/08\/ratsertolitime8hrvstime0rep1.xls\">Rat Sertoli Cell time 8 vs. time 0, rep #1<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3330\/2023\/08\/ratsertolitime8hrvstime0rep2.xls\">Rat Sertoli Cell time 8 vs. time 0, rep #2<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3330\/2023\/08\/ratsertolitime24hrvstime0rep1.xls\">Rat Sertoli Cell time 24 vs. time 0, rep #1<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3330\/2023\/08\/ratsertolitime24hrvstime0rep2.xls\">Rat Sertoli Cell time 24 vs. time 0, rep #2<\/a><\/li>\n<\/ul>\n\n\n\n<h3 class=\"wp-block-heading\">Embryonic Gonad Development (Supplementary)<\/h3>\n\n\n\n<p><strong>Supplementary Data:<\/strong> Embryonic Development Male vs Female<\/p>\n\n\n\n<ul>\n<li><a href=\"https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3330\/2023\/08\/table-1-gene-number-categorized-by-time-points-sex-and-other-filters.xls\">table 1- gene number categorized by time points, sex and other filters.xls<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3330\/2023\/08\/male-11-5-regulated-2-fold-higher-and-signal-above-50-min.xls\">male (11.5 regulated) 2 fold higher and signal above 50 min.xls<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3330\/2023\/08\/male-11-5-2-fold-higher-and-signal-above-50-min.xls\">male (11.5) 2 fold higher and signal above 50 min.xls<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3330\/2023\/08\/male-12-5-regulated-2-fold-higher-and-signal-above-50-min.xls\">male (12.5 regulated) 2 fold higher and signal above 50 min.xls<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3330\/2023\/08\/male-12-5-2-fold-higher-and-signal-above-50-min.xls\">male (12.5) 2 fold higher and signal above 50 min.xls<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3330\/2023\/08\/male-14-5-regulated-2-fold-higher-and-signal-above-50-min.xls\">male (14.5 regulated) 2 fold higher and signal above 50 min.xls<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3330\/2023\/08\/male-14-5-2-fold-higher-and-signal-above-50-min.xls\">male (14.5) 2 fold higher and signal above 50 min.xls<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3330\/2023\/08\/male-16-5-regulated-2-fold-higher-and-signal-above-50-min.xls\">male (16.5 regulated) 2 fold higher and signal above 50 min.xls<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3330\/2023\/08\/male-16-5-2-fold-higher-and-signal-above-50-min.xls\">male (16.5) 2 fold higher and signal above 50 min.xls<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3330\/2023\/08\/male-18-5-regulated-2-fold-higher-and-signal-above-50-min.xls\">male (18.5 regulated) 2 fold higher and signal above 50 min.xls<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3330\/2023\/08\/male-18-5-2-fold-higher-and-signal-above-50-min.xls\">male (18.5) 2 fold higher and signal above 50 min.xls<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3330\/2023\/08\/female-11-5-regulated-2-fold-higher-and-signal-above-50-min.xls\">female (11.5 regulated) 2 fold higher and signal above 50 min.xls<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3330\/2023\/08\/female-11-5-2-fold-higher-and-signal-above-50-min.xls\">female (11.5) 2 fold higher and signal above 50 min.xls<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3330\/2023\/08\/female-12-5-regulated-2-fold-higher-and-signal-above-50-min.xls\">female (12.5 regulated) 2 fold higher and signal above 50 min.xls<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3330\/2023\/08\/female-12-5-2-fold-higher-and-signal-above-50-min.xls\">female (12.5) 2 fold higher and signal above 50 min.xls<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3330\/2023\/08\/female-14-5-regulated-2-fold-higher-and-signal-above-50-min.xls\">female (14.5 regulated) 2 fold higher and signal above 50 min.xls<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3330\/2023\/08\/female-14-5-2-fold-higher-and-signal-above-50-min.xls\">female (14.5) 2 fold higher and signal above 50 min.xls<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3330\/2023\/08\/female-16-5-regulated-2-fold-higher-and-signal-above-50-min.xls\">female (16.5 regulated) 2 fold higher and signal above 50 min.xls<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3330\/2023\/08\/female-16-5-2-fold-higher-and-signal-above-50-min.xls\">female (16.5) 2 fold higher and signal above 50 min.xls<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3330\/2023\/08\/female-18-5-regulated-2-fold-higher-and-signal-above-50-min.xls\">female (18.5 regulated) 2 fold higher and signal above 50 min.xls<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/s3.wp.wsu.edu\/uploads\/sites\/3330\/2023\/08\/female-18-5-2-fold-higher-and-signal-above-50-min.xls\">female (18.5) 2 fold higher and signal above 50 min.xls<\/a><\/li>\n<\/ul>\n\n\n\n<h3 class=\"wp-block-heading\">Androgen Treated Prepuberetal Mouse Testis<\/h3>\n\n\n\n<ul>\n<li>TP-4H-Down-Regulated.xls<\/li>\n\n\n\n<li>TP-4H-Up-Regulated.xls<\/li>\n\n\n\n<li>TP-All-Regulated.xls<\/li>\n\n\n\n<li>TP-8H-Up-Regulated.xls<\/li>\n\n\n\n<li>Commonly-Regulated-Genes-By-TP.xls<\/li>\n\n\n\n<li>TP-16H-UP-Regulated.xls<\/li>\n<\/ul>\n\n\n\n<h3 class=\"wp-block-heading\">Androgen Effect on the Mouse Epididymis<\/h3>\n\n\n\n<ul>\n<li>Caput Wild-type, rep (2))<\/li>\n\n\n\n<li>Cauda Wild-type, rep (2)<\/li>\n\n\n\n<li>Corpus Wild-type, rep (2)<\/li>\n\n\n\n<li>Caput Castrated+Oil (48h), rep (2)<\/li>\n\n\n\n<li>Cauda Castrated+Oil (48h), rep (2)<\/li>\n\n\n\n<li>Corpus Castrated+Oil (48h), rep (2)<\/li>\n\n\n\n<li>Caput Castrated+DHT(48h), rep (2)<\/li>\n\n\n\n<li>Cauda Castrated+DHT(48h), rep (2)<\/li>\n\n\n\n<li>Corpus Castrated+DHT(48h), rep (2)<\/li>\n\n\n\n<li><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/projects\/geo\/query\/acc.cgi?acc=GSE1359\">Androgen Effect on the Mouse Epididymis<\/a> National Library of Medicine<\/li>\n<\/ul>\n\n\n\n<h3 class=\"wp-block-heading\">MSC-1 Reference Sample<\/h3>\n\n\n\n<ul>\n<li><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/projects\/geo\/query\/acc.cgi?acc=GSE2736\">MSC-1 Reference Sample<\/a> National Library of Medicine<\/li>\n<\/ul>\n\n\n\n<h3 class=\"wp-block-heading\">Embryonic Mouse Testis Development<\/h3>\n\n\n\n<ul>\n<li><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/projects\/geo\/query\/acc.cgi?acc=GSE1358\">Embryonic Mouse Testis Development<\/a> (U74V2) National Library of Medicine<\/li>\n<\/ul>\n\n\n\n<h3 class=\"wp-block-heading\">Embryonic Mouse Ovary Development<\/h3>\n\n\n\n<ul>\n<li><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/projects\/geo\/query\/acc.cgi?acc=GSE1359\">Embryonic Mouse Ovary Development<\/a> (U74V2) National Library of Medicine<\/li>\n<\/ul>\n\n\n\n<h3 class=\"wp-block-heading\">Mouse Germ Cells Reference Samples<\/h3>\n\n\n\n<ul>\n<li><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/projects\/geo\/query\/acc.cgi?acc=GSE2736\">Mouse Germ Cells Reference Samples<\/a> National Library of Medicine<\/li>\n<\/ul>\n\n\n\n<h3 class=\"wp-block-heading\">Postpartum Testis Development<\/h3>\n\n\n\n<ul>\n<li><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/projects\/geo\/query\/acc.cgi?acc=GSE926\">Postpartum Testis Development<\/a> National Library of Medicine<\/li>\n<\/ul>\n\n\n\n<h3 class=\"wp-block-heading\">Mouse Primary Myoid Cells Reference Sample<\/h3>\n\n\n\n<ul>\n<li>Myoid cells reference sample (U74AV2)<\/li>\n\n\n\n<li>Myoid cells reference sample (U74BV2)<\/li>\n\n\n\n<li>Myoid cells reference sample (U74CV2)<\/li>\n<\/ul>\n\n\n\n<h3 class=\"wp-block-heading\">Mouse Primary Sertoli Cells Reference Sample<\/h3>\n\n\n\n<p>Pseretoli<\/p>\n\n\n\n<ul>\n<li>Sertoli cells reference sample (U74Av2)<\/li>\n\n\n\n<li>Sertoli cells reference sample (U74Bv2)<\/li>\n\n\n\n<li>Sertoli cells reference sample (U74Cv2)<\/li>\n<\/ul>\n\n\n\n<h3 class=\"wp-block-heading\">More from the National Library of Medicine<\/h3>\n\n\n\n<ul>\n<li><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/projects\/geo\/query\/acc.cgi?acc=GSE4193\">Mouse Germ Cells Reference Samples<\/a> (M430 2.0)<\/li>\n\n\n\n<li><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/projects\/geo\/query\/acc.cgi?acc=GSE6916\">Embryonic Mouse Testis Development<\/a> (M430 2.0)<\/li>\n\n\n\n<li><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/projects\/geo\/query\/acc.cgi?acc=GSE6916\">Embryonic Mouse Ovary Development<\/a> (M430 2.0)<\/li>\n\n\n\n<li><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/projects\/geo\/query\/acc.cgi?acc=GSE9521\">THY1+ 2DPP Gonocytes RA Regulation<\/a> (M430 2.0)<\/li>\n\n\n\n<li><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/geo\/query\/acc.cgi?acc=GSE12769\">Murine Postpartum Testis Development<\/a> (M430 2.0)<\/li>\n\n\n\n<li><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/geo\/query\/acc.cgi?acc=GSE12950\">Testes from Three Mouse Strains, AKR\/N, C57BL\/6 and MRL\/MPJ+\/+<\/a> (M430 2.0)<\/li>\n\n\n\n<li><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/geo\/query\/acc.cgi?acc=GSE13010\">Heat Shock Effects on Testes from C57BL\/6 and AKR\/N Mouse Strains<\/a> (M430 2.0)<\/li>\n\n\n\n<li><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/geo\/query\/acc.cgi?acc=GSE54408\">Neonatal Germ and Sertoli Cell Expression During a Synchronized Wave of Spermatogenesis<\/a> (Mouse Gene 1.0 ST ARRAY)<\/li>\n<\/ul>\n","protected":false},"excerpt":{"rendered":"<p>Affymetrix GeneChip Data The data files are in an Excel spreadsheet format and provide all data obtained from Microarray Suite (MAS) 5.0 (Affymetrix) analysis. Experiment information and description of MAS 5.0 results can be found by downloading PDF files available on this page. If you do not have Adobe Acrobat, please follow this link to [&hellip;]<\/p>\n","protected":false},"author":1351,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"categories":[],"tags":[],"wsuwp_university_location":[],"wsuwp_university_org":[],"_links":{"self":[{"href":"https:\/\/labs.wsu.edu\/griswold-lab\/wp-json\/wp\/v2\/pages\/23"}],"collection":[{"href":"https:\/\/labs.wsu.edu\/griswold-lab\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/labs.wsu.edu\/griswold-lab\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/labs.wsu.edu\/griswold-lab\/wp-json\/wp\/v2\/users\/1351"}],"replies":[{"embeddable":true,"href":"https:\/\/labs.wsu.edu\/griswold-lab\/wp-json\/wp\/v2\/comments?post=23"}],"version-history":[{"count":23,"href":"https:\/\/labs.wsu.edu\/griswold-lab\/wp-json\/wp\/v2\/pages\/23\/revisions"}],"predecessor-version":[{"id":118,"href":"https:\/\/labs.wsu.edu\/griswold-lab\/wp-json\/wp\/v2\/pages\/23\/revisions\/118"}],"wp:attachment":[{"href":"https:\/\/labs.wsu.edu\/griswold-lab\/wp-json\/wp\/v2\/media?parent=23"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/labs.wsu.edu\/griswold-lab\/wp-json\/wp\/v2\/categories?post=23"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/labs.wsu.edu\/griswold-lab\/wp-json\/wp\/v2\/tags?post=23"},{"taxonomy":"wsuwp_university_location","embeddable":true,"href":"https:\/\/labs.wsu.edu\/griswold-lab\/wp-json\/wp\/v2\/wsuwp_university_location?post=23"},{"taxonomy":"wsuwp_university_org","embeddable":true,"href":"https:\/\/labs.wsu.edu\/griswold-lab\/wp-json\/wp\/v2\/wsuwp_university_org?post=23"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}