{"id":19,"date":"2022-07-28T12:35:42","date_gmt":"2022-07-28T19:35:42","guid":{"rendered":"http:\/\/labs.wsu.edu\/storfer\/?page_id=19"},"modified":"2026-03-18T15:51:26","modified_gmt":"2026-03-18T22:51:26","slug":"publications","status":"publish","type":"page","link":"https:\/\/labs.wsu.edu\/storfer\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"
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Publications<\/h2>\n\n\n\n

Blue text indicates Storfer lab personnel.<\/strong><\/span>
* Asterisk indicates corresponding author.
** Double asterisk indicates Storfer lab graduate student.
\u2020 Dagger indicates Storfer lab postdoctoral scientist.<\/p>\n\n\n\n

2024<\/h3>\n\n\n\n

126. Clement, D.T.\u2020<\/span>, Gallinson, D.G., Hamede, R., Jones, M.E., McCallum, H., Margres, M.J., and A. Storfer*<\/strong><\/span>. 2024. Coevolution promotes the coexistence of Tasmanian devils and a fatal, transmissible cancer<\/a>. Evolution<\/em> qpae143: https:\/\/doi.org\/10.1093\/evolut\/qpae143<\/p>\n\n\n\n

125. Strickland, K., Jones, M.E., Storfer, A.<\/strong><\/span>, Hamede, R., Hohenlohe, P.A., Margres, M.J., McCallum, H., Comte, S., Lachish, S., and L.E.B. Kruuk. 2024. Adaptive potential in the face of a transmissible cancer in Tasmanian devils<\/a>. Molecular Ecology<\/em> 33(21): e17531. https:\/\/doi.org\/10.1111\/mec.17531<\/p>\n\n\n\n

124. Hirst, S.R., Rautsaw, R.M.\u2020<\/span>, VanHorn, C.M., Beer, M.A.**<\/span>, McDonald, P.J., Rosales-Garc\u00eda, R.A., Lopez, B.R., Rinc\u00f3n, A.R., Franz-Ch\u00e1vez, H., V\u00e1squez-Cruz, V., Kelly-Hern\u00e1ndez, A., Storfer, A.<\/strong><\/span>, Borja, M., Casta\u00f1eda-Gayt\u00e1n, G., Frandsen, P.B., Parkinson, C.L., Strickland, J.L., and M.J. Margres. 2024. Where the \u2018ruber\u2019 meets the road: Using the genome of the red diamond rattlesnake (Crotalus ruber) to unravel the neutral and adaptive processes driving venom evolution<\/a>. Genome Biology and Evolution<\/em> 16(9): https:\/\/doi.org\/10.1093\/gbe\/evae198<\/p>\n\n\n\n

123. Beer, M.A.**<\/span>, Trumbo, D.R., Rautsaw, R.M.\u2020<\/span>, Kozakiewicz, C.P., Epstein, B., Hohenlohe, P.A., Alford, R.A., Schwarzkopf, L., and A. Storfer*<\/strong><\/span>. 2024. Selection and gene flow interact to produce spatial variation in genomic signatures of local adaptation during the cane toad invasion of Australia<\/a>. Molecular Ecology<\/em> 33(16): e17464. https:\/\/doi.org\/10.1111\/mec.17464<\/p>\n\n\n\n

122. Gallinson, D.G, Kozakiewicz, C.P., Rautsaw, R.M.\u2020<\/span>, Beer, M.A.**<\/span>, Kerlin, D.H., McCallum, H., Hamede, R., Jones, M.E., Storfer, A.<\/strong><\/span>, McMinds, R. and M.J. Margres. 2024. Intergenomic signatures of coevolution between Tasmanian devils and an infectious cancer<\/a>. Proceedings of the National Academy of Sciences<\/em>, USA. 121 (12): e2307780121. https:\/\/doi.org\/10.1073\/pnas.2307780121<\/p>\n\n\n\n

121. Beer, M.A.**<\/span> and A. Storfer*<\/strong><\/span> 2024. Disease-driven top predator decline impacts evolution of a competing mesopredator. Nature Ecology and Evolution<\/em>.<\/p>\n\n\n\n

120. Beer, M.A.**<\/span>, Proft, K.M., Veillet, A., Kozakiewicz, C.P.\u2020<\/span>, Hamilton, D., Hamede, R., McCallum, H., Hohenlohe, P.A., Jones, M.E., Burridge, C., Margres, M.J., Storfer, A.*<\/strong><\/span> 2024. Disease-driven top predator decline affects mesopredator genetic structure<\/a>. Nature Ecology and Evolution<\/em> 8: 293\u2013303. https:\/\/doi.org\/10.1038\/s41559-023-02265-9<\/p>\n\n\n\n

119. Brunner, J.L., Storfer, A.<\/strong><\/span>, E.H. LeSage, T.W.J. Garner, M.J. Gray and J. Hoverman. 2024. Ranavirus ecology: from individual infections to population epidemiology to community impacts. Ranaviruses: Lethal Pathogens of Ectothermic Vertebrates Vol. 2, Edited by M.J. Gray and V.G. Chinchar. Springer.<\/p>\n\n\n\n

118. Bartel, S.\u2020<\/span>, T. Stephenson, D. Crowder, M.E. Jones, A. Storfer<\/strong><\/span>, M. Strickland, L. Lynch Global change influences scavenging and carrion decomposition<\/a>. 2024. Trends in Ecology and Evolution<\/em> 39(2): 152-164. https:\/\/doi.org\/10.1016\/j.tree.2023.09.008<\/p>\n\n\n\n

2023<\/h3>\n\n\n\n

117. Hamede, R., N. Fountain-Jones, F. Arce-Gonzalez, M. Jones, A. Storfer<\/strong><\/span>, P. Hohenlohe, H. McCallum, B. Roche, B. Ujvari, and F. Thomas. 2023. The tumour is in the detail: local phylogenetic, population and epidemiological dynamics of a transmissible cancer in Tasmanian devils<\/a>. Evolutionary Applications<\/em> 13: 1316-1327. https:\/\/doi.org\/10.1111\/eva.13569<\/p>\n\n\n\n

116. Brunner, J.L., A. Storfer<\/strong><\/span>, E.H. LeSage, T.W.J. Garner, M.J. Gray and J. Hoverman. 2023. Ranavirus ecology: from individual infections to population epidemiology to community impacts. in: Ranaviruses: Lethal Pathogens of Ectothermic Vertebrates Vol. 2<\/em>, Edited by M.J. Gray and V.G. Chinchar. Springer.<\/p>\n\n\n\n

2022<\/h3>\n\n\n\n

115. Beer, M.A.**<\/span>, Kane, R.A.**<\/span>, Micheletti, S.J., Kozakiewicz, C.P.\u2020<\/span>, and A. Storfer*<\/strong><\/span>. 2022. Landscape genomics of the streamside salamander: Implications for species management in the face of climate change<\/a>. Evolutionary Applications<\/em> 15:220-236. https:\/\/doi.org\/10.1111\/eva.13321<\/p>\n\n\n\n

114. Waits, L.P., M.A. Murphy and A. Storfer<\/strong><\/span>. 2022. Landscape genetics. Ch. 386, In Encyclopedia of Biodiversity 2nd ed. Ed by S. Levin. Elsevier, Amsterdam.<\/p>\n\n\n\n

2021<\/strong><\/h3>\n\n\n\n

113. Kozakiewicz, C. P.\u2020<\/span>, A.K. Fraik, A.H. Patton<\/span>, M. Ruiz-Aravena, D. Hamilton, R. Hamede, H. McCallum, P.A. Hohenlohe, M. Margres, M. Jones and A. Storfer<\/strong><\/span>. 2021. Spatial variation in gene expression of Tasmanian devil facial tumors despite minimal host transcriptomic response toinfection<\/a>. BMC Genomics 22: 693; https:\/\/doi.org\/10.1186\/s12864-021-07994-4<\/p>\n\n\n\n

112. Stahlke, A., B. Epstein, S. Barbosa, A. Patton<\/span>, S. Hendricks, A. Veillet, A. Fraik, B. Sch\u00f6nfeld, H. McCallum, R. Hamede-Ross, M. Jones, A. Storfer<\/strong><\/span> and P. Hohenlohe. 2021. Contemporary and historical selection in Tasmanian devils (Sarcophilus harrisii) support novel, polygenic response to transmissible cancer. Proceedings of the Royal Society B. 288 (1951), 20210577<\/p>\n\n\n\n

111. Everson, K.M., L.N. Gray, A.G. Jones, N.M. Lawrence, M.E. Foley, K.L. Sovacool, J.D. Kratovil, S. Hotaling, P.M. Hime, A. Storfer<\/strong><\/span>, G. Parra-Olea, X. Aguilar-Miguel, E.M. O\u2019Neill, L. Zambrano, H.B. Shaffer, D. W. Weisrock. 2021. Geography is more important than life history in the recent diversification of the tiger salamander complex<\/a>. PNAS 118 (17) e2014719118; https:\/\/doi.org\/10.1073\/pnas.2014719118<\/p>\n\n\n\n

110. Cunningham, C.X., S. Comte, H. McCallum, D. Hamilton, R. Hamede, A. Storfer<\/strong><\/span>, B. Lazenby, T. Hollings, M. Ruiz-Aravena, D. H. Kerlin, G. Hocking, M.E. Jones. 2021. Quantifying 25 years of disease-caused Tasmanian devil population declines<\/a>. Ecology Letters 24:958-969. https:\/\/doi.org\/10.1111\/ele.13703<\/p>\n\n\n\n

109. Hamede, R., T. Madsen, H. McCallum, A. Storfer<\/strong><\/span>, P. Hohenlohe, H. Siddle, J. Kaufman, M. Giraudeau, M. Jones, F. Thomas and B. Ujvari. 2021. Darwin, the devil, and the management of transmissible cancers<\/a>. Conservation Biology 35: 748-751. https:\/\/doi.org\/10.1111\/cobi.13644<\/p>\n\n\n\n

2020<\/strong><\/h3>\n\n\n\n

108. Patton, A.H.<\/span>, M. Lawrance<\/span>, M.J. Margres, C.P. Kozakiewicz<\/span>, R. Hamede, M. Ruiz-Aravena, D.G. Hamilton, S. Comte, L. Ricci, R. Taylor, T. Stadler, A. Leach\u00e9, H. McCallum, M. Jones, P.A. Hohenlohe and A. Storfer.*<\/strong><\/span> 2020. A transmissible cancer shifts from emergence to endemism in Tasmanian devils. Science 370: eabb9772. DOI: 10.1126\/science.abb9772<\/p>\n\n\n\n

107. Micheletti, S.<\/span>** and A. Storfer*<\/strong><\/span>. 2020. Mixed support for gene flow as a constraint to local adaptation and contributor to the limited geographic range of an endemic salamander. Molecular Ecology. 29: 4091-4101. https:\/\/doi.org\/10.1111\/mec.15627<\/p>\n\n\n\n

106. Margres, M\u2020., M. Ruiz-Aravena, R. Hamede, K. Chawla, A. Patton<\/span>, M.F. Lawrance<\/span>, A.K. Fraik, A.R. Stahlke, B.W. Davis, E.A. Ostrander, M.E. Jones, H.I. McCallum, P.J. Paddison, P.A. Hohenlohe, D. Hockenbery and A. Storfer<\/strong><\/span>. 2020. Spontaneous tumor regression in Tasmanian devils associated with RASL11A activation. Genetics 215: 1143-1152. doi.org\/10.1534\/genetics.120.303428 ^highlighted article; NSF discovery files highlight<\/p>\n\n\n\n

105. Hamilton, D.G., R.K. Hamede, M.E. Jones, E. Cameron, D. Kerlin, H.I. McCallum, A. Storfer<\/strong><\/span> and P.A. Hohenlohe. 2020. Disease and sickness behaviour: tumour progression affects interaction patterns and social network structure in wild Tasmanian devils. Proceedings of the Royal Society, Series B. 287: 20202454; doi.org\/10.1098\/rspb.2020.2454<\/p>\n\n\n\n

104. Smith, L.E.<\/span>, M. Jones, R. Hamede, R. Risques, A. Patton<\/span>, P.A. Carter and A. Storfer*<\/strong><\/span>. 2020. Telomere length is a susceptibility marker for Tasmanian devil facial tumor disease. Ecohealth. 17: 280-291. doi.org\/10.1007\/s10393-020-01491-y<\/p>\n\n\n\n

103. Liberles, D.A., B. Chang, K. Geiler-Samerotte, A. Goldman, J. Hey, B. Kacar, M. Meyer, W. Murphy, D. Posada and A. Storfer<\/strong><\/span>. 2020. Emerging frontiers in the study of molecular evolution. Journal of Molecular Evolution 88: 211-226. doi.org\/10.1007\/s00239-020-09932-6<\/p>\n\n\n\n

102. Kozakiewicz, C.P\u2020<\/span>., L. Ricci**<\/span>, A.H. Patton**<\/span>, S.A. Hendricks, M.J. Margres\u2020, R .Hamede, M. Ruiz-Aravena, D.G. Hamilton, H. McCallum, M.E. Jones, P.A. Hohenlohe and A. Storfer*<\/strong><\/span>. 2020. Comparative landscape genetics reveals differential effects of environment on host and pathogen gene flow in Tasmanian devils (Sarcophilus harrisii) and a transmissible cancer. Molecular Ecology. 29: 3217-3233; doi:10.1111\/mec.15558<\/p>\n\n\n\n

101. Patton, A.H.**<\/span>, M.J. Margres\u2020<\/span>, B. Epstein\u2020<\/span>, J.M. Epstein, L.J. Harmon and A. Storfer*<\/strong><\/span>. 2020. Hybridizing salamanders experience accelerated diversification rates. Scientific Reports 10:6566. doi.org\/10.1038\/s41598-020-63378-w<\/p>\n\n\n\n

100. Fraik, A.K.**<\/span>, M. Margres<\/span>, B. Epstein<\/span>, S. Barbosa, M. Jones, S. Hendricks, B. Sch\u00f6nfeld, A. Stahlke, A. Veillet, R. Hamede, H. I. McCallum, E. Lopez-Contreras***, S. J. Kallinen***, P.A. Hohenlohe, J. L. Kelley and A. Storfer*<\/strong><\/span>. 2020. Disease swamps molecular signatures of genetic-environmental associations to abiotic factors in Tasmanian devil (Sarcophilus harrisii) populations. Evolution 74: 1392-1408. doi.org\/10.1111\/evo.14023 ^cover article<\/p>\n\n\n\n

99. Storfer, A.*<\/strong><\/span>, C. Kozakiewicz\u2020<\/span>, M. Beer**<\/span> and A.E. Savage 2020. Applications of population genomics for understanding and mitigating wildlife disease. In Hohenlohe PA, Rajora OP, eds. Population Genomics: Wildlife. Springer. doi.org\/10.1007\/13836_2020_73<\/p>\n\n\n\n

98. Hendricks, S.A., A. Storfer<\/strong><\/span> and P.A. Hohenlohe 2020. Population genomics of wildlife cancer. In Hohenlohe PA, Rajora OP, eds. Population Genomics: Wildlife. Springer. doi.org\/10.1007\/13836_2020_81<\/p>\n\n\n\n

2019<\/strong><\/h3>\n\n\n\n

97. Patton, A.H.**<\/span>, M.J. Margres\u2020<\/span>, M.E. Jones, S. Hendricks, A. Stahlke, K. Lewallen, R.K Hamede, M. Ruiz-Aravena, H. I. McCallum, O. Ryder, P.A. Hohenlohe and A. Storfer*<\/strong><\/span>. 2019. Contemporary demographic reconstruction methods are robust to genome quality: A case study in Tasmanian devils. Molecular Biology and Evolution. 36:2906-2921. doi.org\/10.1093\/molbev\/msz191<\/p>\n\n\n\n

96. Wells, K., R.K. Hamede, M.E. Jones, P.A. Hohenlohe, A. Storfer<\/strong><\/span> and H.I. McCallum. 2019. Individual and temporal variation in pathogen load predicts long-term impacts of an emerging infectious disease. Ecology 100(3): e06213. doi.org\/10.1002\/ecy.2613<\/p>\n\n\n\n

95. Fraik, A.K.<\/span>, C. Quackenbush, M.J. Margres\u2020<\/span>, S. Comte, D.G. Hamilton, C. Kozakiewicz\u2020<\/span>, M.E. Jones, R.K. Hamede, P.A. Hohenlohe, A. Storfer<\/strong><\/span> and J.L. Kelley. 2019. Transcriptomics of Tasmanian devil (Sarcophilus harrisii) ear tissue reveals homogeneous gene expression patterns across a heterogeneous landscape. Genes 10(10): 801. doi.org\/10.3390\/genes10100801<\/p>\n\n\n\n

94. Hohenlohe, P.A.*, H.I. McCallum, M. E. Jones, M. Lawrance<\/span>, R.K. Hamede, and A. Storfer*<\/strong><\/span>. 2019. Conserving adaptive potential: Lessons from Tasmanian devils and their transmissible cancer. Conservation Genetics. 20:81-87. doi.org\/10.1007\/s10592-019-01157-5<\/p>\n\n\n\n

93. Hamilton, D., M. Jones, E. Cameron, H. McCallum, A. Storfer<\/strong><\/span>, P.A. Hohenlohe and R.K. Hamede. 2019. Rate of inter-sex interactions affects injury likelihood in Tasmanian devil contact networks. Behavioral Ecology. 30: 1087-1095; doi.org\/10.1093\/beheco\/arz054<\/p>\n\n\n\n

92. James, S., G. Jennings Y-M. Kwon, M. Stammnitz A. Fraik<\/span>, A. Storfer<\/strong><\/span>, S. Comte, D. Pemberton, S. Fox, B. Brown, R. Pye, G. Woods, B. Lyons, P. Hohenlohe, H.V. Siddle, F. Thomas, B. Ujvari, E. Murchison, M. Jones and R. Hamede. 2019. Tracing the rise of malignant cell lines: distribution, epidemiology and evolutionary interactions of two transmissible cancers in Tasmanian devils. Evolutionary Applications 12:1772-1780. DOI: 10.1111\/eva.12831<\/p>\n\n\n\n

91. Jones, M., R. Hamede, A. Storfer<\/strong><\/span>, P. A. Hohenlohe., E. Murchison, H. McCallum. 2019. Emergence, transmission and evolution of an uncommon enemy: Tasmanian devil facial tumour disease. Pp. In Wilson, Fenton and Thompkins (Eds.) Wildlife Disease Ecology: Linking Theory to Data and Application. Cambridge University Press, Cambridge, UK.<\/p>\n\n\n\n

90. Emel, S.<\/span>, D. Olson, L.L. Knowles and A. Storfer<\/strong><\/span>. 2019. Comparative landscape genetics of two endemic torrent salamander species, Rhyacotriton kezeri and R. variegatus: implications for forest management and species conservation. Conservation Genetics. 20: 801-815 doi.org\/10.1007\/s10592-019-01172-6.<\/p>\n\n\n\n

2018<\/h3>\n\n\n\n

89. Storfer, A*<\/strong><\/span>., P.A. Hohenlohe, M.J. Margres\u2020<\/span>, H.I. McCallum, A.H. Patton<\/span>, A.K. Fraik<\/span>, M. Lawrance<\/span>, L. Ricci<\/span>, A. Stahlke, M.E. Jones 2018. The devil is in the details: Genomics of a transmissible cancer in Tasmanian devils. PLoS Pathogens. 14(8): e1007098 doi.org\/10.1371\/journal.ppat.1007098<\/p>\n\n\n\n

88. Storfer, A*.<\/strong><\/span>, A.H. Patton<\/span> and A.K. Fraik<\/span>. 2018. Navigating the intersection of landscape genomics and landscape genetics. Frontiers in Genetics. 13, doi.org\/10.3389\/fgene.2018.00068<\/p>\n\n\n\n

87. Margres, M.J.\u2020<\/span>, M. Jones, B Epstein\u2020<\/span>, S. Comte, S. Fox\u2026 A. Storfer*<\/strong><\/span>. 2018. Large-effect loci affect survival in Tasmanian devils infected with a transmissible cancer. Molecular Ecology 27: 4189-4199. https:\/\/doi.org\/10.1111\/mec.14853.<\/p>\n\n\n\n

86. Margres, M.J.\u2020, M. Ruiz, R. Hamede, M. Jones, M. Lawrance, S.A. Hendricks, A. Patton**, B.W. Davis, E. A. Ostrander, H. McCallum, P.A. Hohenlohe and A. Storfer* 2018. The genomic basis of tumor regression in Tasmanian devils (Sarcophilus harrisii). Genome Biology and Evolution. 10:3012-3025. \/doi.org\/10.1093\/gbe\/evy229.<\/p>\n\n\n\n

85. Ruiz-Aravena, M., M.E. Jones, S. Carver, S. Estay, C. Espejo, A. Storfer, R. Hamede. 2018. Sex bias in ability to cope with cancer: Tasmanian devils and facial tumour disease. Proceedings of the Royal Society Series B. 285(21): 20182239. DOI: 10.1098\/rspb.2018.2239<\/p>\n\n\n\n

84. Robertson, J., M. Murphy, C. Pearl, M. Adams, M. P\u00e1ez-Vacas, S. Haig, Susan, D. Pilliod, A. Storfer, W. C. Funk. 2018. Regional variation in drivers of connectivity for two frog species (Rana pretiosa and R. luteiventris from U.S. Pacific Northwest. Molecular Ecology 27: 3242-3256.<\/p>\n\n\n\n

2017<\/h3>\n\n\n\n

83. Wells, K., R.K. Hamede, A. Storfer, P.A. Hohenlohe, M.E. Jones and H. I. McCallum. 2017. Infection of the fittest: devil facial tumour disease has greatest effect on individuals with highest reproductive output. Ecology Letters 20: 770-778.<\/p>\n\n\n\n

82. Storfer, A., B. Epstein\u2020, M. Jones, S. Micheletti**, S.F. Spear**, S. Lachish and S. Fox. 2017. Landscape genetics of the Tasmanian devil: Implications for the spread of an infectious cancer. Conservation Genetics. 18: 1287-1297; DOI: 10.1007\/s10592-017-0980-4<\/p>\n\n\n\n

81. Hendricks, S. B. Epstein\u2020, B Sch\u00f6nfeld, C. Wiench, R. Hamede, M. Jones, A Storfer and P. Hohenlohe. 2017. Conservation implications of limited genetic diversity and population structure in Tasmanian devils (Sarcophilus harrisii). Conservation Genetics 18: 977-982.<\/p>\n\n\n\n

80. Micheletti, S**. and A Storfer. 2017. An approach for identifying cryptic barriers to gene flow that limit species\u2019 geographic ranges. Molecular Ecology 26: 490-504.<\/p>\n\n\n\n

79. Lowry, DB., S Hoban, JL Kelley, KE Lotterhos, LK Reed, MF Antolin and A Storfer. 2017. Responsible RAD: Striving for best practices in population genomic studies of adaptation. Molecular Ecology Resources 17: 366-369.<\/p>\n\n\n\n

78. Greenberg, C.H, S. A. Johnson, R. Owen and A. Storfer, 2017. Amphibian breeding phenology and reproductive success at isolated ephemeral wetlands: An examination using concurrent terrestrial and aquatic sampling. Canadian Journal of Zoology 95: 673-684<\/p>\n\n\n\n

2016<\/h3>\n\n\n\n

77. Epstein, B.\u2020, M Jones, R Hamede, S Hendricks, H McCallum, EP Murchison, B Sch\u00f6nfeld, C Wiench, P Hohenlohe and A Storfer*. 2016. Rapid evolutionary response to a transmissible cancer. Nature Communications. DOI: 10.1038\/ncomms5084 ^ISI Highly Cited
*covered by NY Times, Washington Post, Science News, Nature News, Discover, BBC, etc.<\/p>\n\n\n\n

76. Lowry, DB., S Hoban, JL Kelley, KE Lotterhos, LK Reed, MF Antolin and A Storfer. 2016. Breaking RAD: The utility of restriction site-associated DNA sequencing for genome scans of adaptation. Molecular Ecology Resources. 17: 142-152. DOI: 10.1111\/1755-0998.12635 ^ISI Highly Cited<\/p>\n\n\n\n

75. Trumbo, D.R.**, B. Epstein\u2020, L. Schawazkopf, P.A. Hohenlohe, R. Alford and A. Storfer. 2016. Mixed population genomics support for the central marginal hypothesis across the invasive range of the cane toad (Rhinella marina) in Australia. Molecular Ecology 25: 4161-4176.<\/p>\n\n\n\n

74. Hoban, S. JL Kelley, KE Lotterhos, MF Antolin, G. Bradburd, DB Lowry, ML Poss, LK Reed, A. Storfer and MC Whitlock. 2016. Finding the genomic basis of local adaptation in non-model organisms: pitfalls, practical solutions and future directions. American Naturalist 188: 379-397.
* recommended by Faculty of 1000; ^ISI Highly Cited; @Hot Paper<\/p>\n\n\n\n

73. Epstein, B\u2020. and A. Storfer. 2016. Comparative genomics of an emerging amphibian virus. G3: Genes,Genomes, Genetics. 6:15-27 doi: 10.1534\/g3.115.023762<\/p>\n\n\n\n

2015<\/h3>\n\n\n\n

72. Micheletti, S**. and A. Storfer. 2015. A test of the central-marginal hypothesis using population genetics and ecological niche modelling in an endemic salamander (Ambystoma barbouri). Molecular Ecology 24: 967-979.<\/p>\n\n\n\n

71. Emel, S. L.**. and A. Storfer. 2015. Landscape genetics and genetic structure of the southern torrent salamander, Rhyacotriton variegatus. Conservation Genetics 16: 209-221.<\/p>\n\n\n\n

70. Han, B.A., J.L. Kerby, C.L. Searle, A. Storfer and A.R. Blaustein. 2015. Host species composition influences the severity of infection among amphibians. Ecology and Evolution 5: 1432-1439.<\/p>\n\n\n\n

69. Storfer, A. 2015. Landscape genetics. Oxford Bibliographies in Evolutionary Biology. DOI: 10.1093\/OBO\/9780199941728-0066.<\/p>\n\n\n\n

68. Brunner, J.L., M.J. Gray, J.T. Hoverman and A. Storfer. 2015. Ranavirus ecology and evolution. Pp. 71-104 In Ranaviruses: Lethal Pathogens of Ectothermic Vertebrates. Ed by: MJ Gray and VG Chinchar. Springer, Berlin, Germany, 246pp.<\/p>\n\n\n\n

2014<\/h3>\n\n\n\n

67. Zancolli, G., M.O. Rodel, I.G. Dewenter and A. Storfer. 2014. Comparative landscape genetics of two river frog species along an altitudinal gradient on Mt. Kilimanjaro. Molecular Ecology 23: 4989-5002.<\/p>\n\n\n\n

66. Takahashi, M.K., J.M. Eastman**, D. A. Griffin, J. Baumsteiger, M.J. Parris, and A. Storfer. 2014. A stable niche assumption-free test of ecological divergence. Molecular Phylogenetics and Evolution 76: 211-226.
65. Emel, S.L.** and A. Storfer. 2014. Characterization of 10 microsatellite markers for the southern torrent salamander (Rhyacotriton variegatus). Conservation Genetics Resources 6: 881-882.<\/p>\n\n\n\n

64. Storfer, A*., S.G. Mech\u2020, M.W. Reudink and K. Lew*** 2014. Inbreeding and strong population subdivision in an endangered salamander species. Conservation Genetics 15: 137-151.<\/p>\n\n\n\n

2013<\/h3>\n\n\n\n

63. Zancolli, G., A. Storfer and M.O. R\u00f6del, 2013. Detection of Batrachochytrium dendrobatidis in river frogs (genus Amietia) on Mount Kilimanjaro, Tanzania. Herpetological Review.44:611-614.<\/p>\n\n\n\n

62. Trumbo, D.**, S.F. Spear, J. Baumsteiger and A. Storfer.* 2013. Rangewide landscape genetics of an endemic Pacific Northwestern salamander. Molecular Ecology. 22: 1250-1266.<\/p>\n\n\n\n

2012<\/h3>\n\n\n\n

61. Emel, S.L.** and A. Storfer. 2012. A decade of amphibian population genetic studies: Synthesis and recommendations. Conservation Genetics 13:1685-1689.<\/p>\n\n\n\n

60. Dudianec, R.Y., S.F. Spear, J.S. Richardson and A. Storfer*. 2012. Landscape vs. historical effects on genetic structure in core vs. peripheral populations of the coastal giant salamander, Dicamptodon tenebrosus. PLoS ONE 7(5): e36769<\/p>\n\n\n\n

59. Storfer, A. 2012. Landscape genetics. Ch. 386, In Encyclopedia of Biodiversity. Ed by S. Levin. Elsevier, Amsterdam.<\/p>\n\n\n\n

58. Spear, S.F., C.M. Chrisafulli and A. Storfer*. 2012. Rapid recolonization of tailed frogs in the Mt. St Helens blast zone is moderated by post-disturbance management. Ecological Applications 22:856-869.<\/p>\n\n\n\n

2011<\/h3>\n\n\n\n

57. Kerby, J.L. \u2020, A. Hart and A. Storfer*. 2011. Combined effects of virus, pesticide and predator cue on the larval tiger salamander (Ambystoma tigrinum). Ecohealth 8:46-54.<\/p>\n\n\n\n

56. Miller, D., M. J. Gray and A. Storfer. 2011. Ecopathology of ranaviruses infecting amphibians. Viruses. 3:2351-2373. doi: 10.3390\/v3112351<\/p>\n\n\n\n

55. Venesky, M.D., M.J. Parris, J.L. Kerby\u2020 and A. Storfer 2011. Differential patterns of disease transmission and infection in amphibian communities. PLoS ONE 6(9): e24991.<\/p>\n\n\n\n

54. Eastman, J.M.** and A. Storfer. 2011. Correlations of life-history and distributional-range variation with salamander diversification rates: Evidence for species selection. Systematic Biology 60:503-518.<\/p>\n\n\n\n

53. Lachish, S., K.J. Miller, A. Storfer, A.W. Goldzien and M.E. Jones. 2011. Evidence that disease-induced population decline changes genetic structure and alters dispersal patterns in the Tasmanian devil. Heredity 106:172-182.<\/p>\n\n\n\n

2010<\/h3>\n\n\n\n

52. Dudianec, RY, A Storfer, SF Spear** and JS Richardson. 2010. New microsatellite markers for examining genetic variation in peripheral and core populations of the Coastal Giant Salamander (Dicamptodon tenebrosus). PLoS One 5(12): e14333.<\/p>\n\n\n\n

51. Manel, S., S. Joost, B. Epperson, R. Holderegger, A. Storfer, M. S. Rosenberg, K. Scribner, A. Bonin and M-J. Fortin. 2010. Perspectives on the use of landscape genetics to detect adaptive genetic variation in the field. Molecular Ecology 19:3760-3772.<\/p>\n\n\n\n

50. Storfer, A.*, M. A. Murphy, S. F. Spear**, A. R. Holderegger and L. P. Waits. 2010. Landscape genetics: Where are we now? Invited review, Molecular Ecology 19:3496-3514. ^ ISI highly cited<\/p>\n\n\n\n

49. Murphy, M. A.**, R. Dezzani, D. S. Pilliod and A. Storfer. 2010. Landscape genetics of high mountain frog metapopulations: an application of gravity models. Molecular Ecology 19:3634-3649.<\/p>\n\n\n\n

48. Murphy, M.A.**, J.S. Evans and A. Storfer. 2010. Quantifying ecological process at multiple spatial scales using landscape genetics: Bufo boreas connectivity in Yellowstone National Park. Ecology 91: 252-261.<\/p>\n\n\n\n

47. Kerby, J.L.\u2020, K. Richards-Hrdlicka, A. Storfer and D.K. Skelly. 2010. An examination of amphibian sensitivity to environmental contaminants: Are amphibians poor canaries? Ecology Letters 13:60-67.<\/p>\n\n\n\n

46. Spear, S.F.** and A. Storfer. 2010. Anthropogenic and natural disturbance lead to differing patterns of gene flow in the Rocky Mountain tailed frog, Ascaphus montanus. Biological Conservation. 143:778-786.<\/p>\n\n\n\n

BEFORE 2010<\/h3>\n\n\n\n

45. Venesky, M.D., M. J. Parris and A. Storfer. 2009. Impacts of Batrachochytrium dendrobatidis infection on tadpole foraging performance. Ecohealth 6:565-576.
44. Storfer, A.*, J. M. Eastman** and S. F. Spear**. 2009. Modern molecular methods for amphibian conservation. Bioscience. 59: 559-571.
43. Eastman, J.M.**, J.N. Niedzwiecki, B.P. Nadler and A. Storfer*. 2009. Duration and consistency of historical selection are correlated with adaptive trait evolution in the streamside salamander, Ambystoma barbouri. Evolution 63: 2636\u20132647.
42. Kerby, J.L.\u2020 and A. Storfer. 2009. Combined effects of atrazine and chlorpyrifos on disease susceptibility of the tiger salamander to Ambystoma tigrinum virus. Ecohealth 6:91-98.
41. Steele, C.A.**, J. Baumsteiger and A. Storfer*. 2009. The influence of life history variation on genetic structure in two sympatric salamander taxa. Molecular Ecology 18: 1629-1639.
40. Murphy, M. A.**, J.S. Evans, S. Cushman and A. Storfer. 2008. Representing genetic variation as continuous surfaces: An approach for identifying spatial dependency in landscape genetic studies. Ecography 31:685-697.
39. Cotter, J.D.**, A. Storfer, R.B. Page, C.K. Beachy and S.R. Voss. 2008. Transcriptional response of Mexican axolotls to Ambystoma tigrinum virus (ATV) infection. BMC Genomics 9: 493
38. Spear, S.F.** and A. Storfer. 2008. Landscape genetic structure of tailed frogs in protected versus managed forests. Molecular Ecology. 17: 4642\u20134656.
37. Ridenhour, B. J.\u2020 and A. Storfer. 2008. Geographically variable selection in Ambystoma tigrinum Virus (Iridoviridae) throughout the Western United States. Journal of Evolutionary Biology 21:1151-1159.
36. Bolker, B.M., F. de Castro, A. Storfer., S. G., Mech., E. Harvey. and J. P. Collins. 2008. Disease as a selective force precluding widespread cannibalism: A case study of an iridovirus of tiger salamanders, Ambystoma tigrinum. Evolutionary Ecology Research 10:105-128.
35. Spear, S. F.**, J. Baumsteiger and A. Storfer. 2008. Newly developed polymorphic microsatellite markers for frogs of the genus Ascaphus. Molecular Ecology Resources 8:936-938.
34. Steele, C. A.**, J. Baumsteiger and A. Storfer. 2008. Polymophic tetranucleotide microsatellites for Cope\u2019s giant salamander (Dicamptodon copei) and Pacific giant salamander (Dicamptodon tenebrosus). Molecular Ecology Resources. 8: 1071-1073.
33. Storfer, A.*, M. E. Alfaro, B. J. Ridenhour\u2020, J. K. Jancovich, S. G. Mech\u2020, M. J. Parris and J. P. Collins., 2007. Phylogenetic concordance analysis shows an emerging pathogen is novel and endemic. Ecology Letters. 10:1075-1083.
32. Steele, C. A.** and A. Storfer. 2007. Phylogeographic incongruence of codistributed amphibian species based on small differences in geographic distribution. Molecular Phylogenetics and Evolution. 43:468-479.
31. Giordano, A. R.**, B. J. Ridenhour\u2020 and A. Storfer* 2007. The influence of altitude and topography on genetic structure in the long-toed salamander (Ambystoma macrodactylum). Molecular Ecology. 16:1625-1637.
30. Storfer, A., M. A. Murphy, J. S. Evans, C. S. Goldberg, S. Robinson, S. F. Spear, R. Dezzani, E. Demelle, L. Vierling, and L. P. Waits. 2007. Putting the \u201clandscape\u201d in landscape genetics. Heredity 98:128-142.
29. Huang, Y-M., Trevisan, M.S. and A. Storfer. 2007. The impact of the \u201call-of-the-above\u201d option and student ability on multiple choice tests. International Journal for the Scholarship of Teaching and Learning.1: 1-13.
28. Forson, D. D.** and A. Storfer* 2006. Atrazine increases ranavirus susceptibility in the tiger salamander, Ambystoma tigrinum. Ecological Applications 16: 2325-2332.
27. Spear, S. F.**, C. R. Peterson, M. Matocq and A. Storfer. 2006. Molecular evidence for recent population size reductions of tiger salamanders (Ambystoma tigrinum) in Yellowstone National Park. Conservation Genetics 7:605-611.
26. Steele, C. A.** and A. Storfer. 2006. Coalescent-based hypothesis testing supports multiple Pleistocene refugia in the Pacific Northwest for the Pacific Giant Salamander (Dicamptodon tenebrosus). Molecular Ecology 15:2477-2487.
25. Forson, D**. and A. Storfer. 2006. Effects of atrazine and iridovirus infection on survival and life history characteristics in long-toed salamanders, Ambystoma macrodactylum. Environmental Toxicology and Chemistry 25:168-173.
24. Parris, M. P., E. Reese and A. Storfer. 2006. Antipredator behavior of chytridiomycosis-infected leopard frog (Rana pipiens) tadpoles. Canadian Journal of Zoology 84:58-65.
23. Spear, S. F.**., C. R. Peterson, M. Matocq and A. Storfer. 2005. Landscape genetics of the blotched tiger salamander, Ambystoma tigrinum melanostictum. Molecular Ecology 14: 2553-2564.
22. Steele, C. A**, B. C. Carstens, A. Storfer and J. Sullivan. 2005. Testing hypotheses of speciation timing in Dicamptodon copei and Dicamptodon aterrimus (Caudata: Dicamptodontidae). Molecular Phylogenetics and Evolution 36:90-100.
21. Parris, M. P., A. Storfer, J. P. Collins and E. W. Davidson. 2005. Pathogen effects on life history in tiger salamander (Ambystoma tigrinum) larvae. Journal of Herpetology 39: 366-372.
20. Jancovich, J. K., E. W. Davidson, N. Parameswaran, J. Mao, V. G. Chinchar, J. P. Collins, B. L. Jacobs and A. Storfer* 2005. Evidence for emergence of an amphibian disease because of human-enhanced spread. Molecular Ecology 14:213-224.
19. Collins, J.P., N. Cohen, E.W. Davidson, J. Longcore and A. Storfer. 2005. Global amphibian declines: An interdisciplinary research challenge for the 21st century. Pp. 43-52. In Lannoo, M.J. (Ed.), Status and Conservation of U.S. Amphibians. Volume 1: Conservation Essays. University of California Press, Berkeley, California.
18. Storfer, A.*, S. G. Mech\u2020, M. W. Reudink***, R. E. Ziemba, J. L. Warren*** and J. P. Collins. 2004. Introgression by non-native species in the endangered tiger salamander, Ambystoma tigrinum stebbinsi. Copeia 2004(4): 783-796.
17. Storfer, A.* and C. White***. 2004. Phenotypically plastic responses of larval tiger salamanders, Ambystoma tigrinum, to different predators. Journal of Herpetology 38:612-615.
16. Dybdahl, M. and A. Storfer. 2003. Parasite local adaptation: Red Queen versus Suicide King. Trends in Ecology and Evolution 18: 523-530.
15. Storfer, A.* 2003. Amphibian declines: Future directions. Diversity and Distributions 9: 151-163.
14. Collins, J. P. and A. Storfer. 2003. Amphibian declines: Sorting the hypotheses. Diversity and Distributions 9: 89-98.
13. Mech, S.G., A. Storfer*, J. Ernst, M. Reudink and S. Maloney. 2003. Polymorphic microsatellite primers for tiger salamanders, Ambystoma tigrinum. Molecular Ecology Notes 3(1): 79-81.
12. Storfer, A.* 2002. Protecting Biodiversity. Quarterly Review of Biology 77(3): 323.
11. Storfer, A.* 2000. Genetics and the extinction of species. Quarterly Review of Biology 75(2): 182-183.
10. Storfer, A.* 2000. Amphibian declines: Unraveling the mystery. Amphibian and Reptile Conservation 2(1):33.
9. Collins, J.P., E. Davidson, and A. Storfer. 1999. Disease ecology and its role in shaping life history. Sonoran Herpetologist 12:75-76.
8. Storfer, A.* 1999. Gene flow and local adaptation in a sunfish-salamander system. Behavioral Ecology and Sociobiology 46(4): 273-279.
7. Storfer, A.*, J. Cross, V. Rush, and J. Caruso. 1999. Adaptive coloration and gene flow as a constraint to local adaptation in the streamside salamander, Ambystoma barbouri. Evolution 53(3): 889-898.
6. Storfer, A.* 1999. Gene flow and population subdivision in the streamside salamander, Ambystoma barbouri. Copeia 1999(1): 174-181.
5. Storfer, A.* 1999. Gene flow and endangered species translocations: A topic revisited. Biological Conservation 87: 173-180.
4. Storfer, A.* and A. Sih. 1998. Gene flow and ineffective antipredator behavior in a stream-breeding salamander. Evolution 52(2): 558-565.
3. Storfer, A.* 1996. Quantitative genetics: A promising approach for the assessment of genetic variation in endangered species. Trends in Ecology and Evolution. 11(8): 343-348.
2. Storfer, A.* 1996. Population biology and herpetological conservation: A cautionary note. Amphibian and Reptile Conservation 1: 20-22.
1. Storfer, A.* 1995. Conservation biology: Progress or stasis? Conservation Biology 9(5): 982-983.
* corresponding author; ** graduate student in the lab; *** undergraduate student in the lab;
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