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Kelley Lab Publications


Names in bold are current or former Kelley Lab members.


  • Greenway, R.Barts, N., Henpita C., Brown A.P., Arias Rodriguez L., Rodríguez Peña C.M., Arndt S., Lau G.Y., Murphy M.P.Wu L., Lin D., Shaw J.H., Kelley J.L., Tobler M. Convergent evolution of conserved mitochondrial pathways underlies repeated adaptation to extreme environments. DOI: 10.1101/2020.02.24.959916 [preprint]
  • Tronstad L.M., Hotaling S., Giersch J.J., Wilmot O.J., Finn D.S. Headwaters fed by subterranean ice: potential climate refugia for mountain stream communities? DOI: 10.1101/788273 [preprint]
  • Hotaling, S.*, Shah, A.A.*, McGowan, K.L., Tronstad, L.M., Giersch, J.J., Finn, D.S., Woods, H.A., Dillon, M.E., Kelley, J.L. Mountain stoneflies may tolerate warming streams: evidence from organismal physiology and gene expression. DOI: 10.1101/2019.12.16.878926; *Contributed equally, corresponding authors. [preprint]
  • Tronstad L., Wilmot O., Thornbrugh D., Hotaling S. To composite or replicate: how sampling method and protocol differences alter stream bioassessment metrics. DOI: 10.1101/847327. [preprint]
  • Hotaling S., Bartholomaus T.C., Gilbert S.L. Rolling stones gather moss: movement and longevity of moss balls on an Alaskan glacier. DOI: 10.1101/687665. [preprint]









  • Ma, X., Kelley J.L., Eilertson, K., Musharoff, S., Degenhardt, J.D., Martins, A.L., Vinar, T., Kosiol, C., Siepel, A., Gutenkust, R.N. and C.D. Bustamante. (2013) Population genomic analysis reveals a rich speciation and demographic history of orang-utans (Pongo pygmaeus and Pongo abelii). PLoS ONE 8(10): e77175. doi:10.1371/journal.pone.0077175.
  • Prado-Martinez, J.*, Sudmant, P.H.*, Kidd, J.M., Li, H., Kelley, J.L., Lorente-Galdos, B., Veeramah, K., Woerner, A., O’Connor, T.D., Santpere, G., Cagan, A., Theunert, C., Casals, F., Laayouni, H., Munch, K., Hobolth, A., Halager, A.E., Malig, M., Hernandez-Rodriguez, J., Hernando-Herraez, I., Prüfer, K., Pybus, M., Johnstone, L., Lachmann, M., Alkan, C., Twigg, D., Petit, N., Baker, C., Hormozdiari, F., Fernandez-Callejo, M., Dabad, M., Wilson, M.L., Stevison, L., Camprubí, C., Carvalho, T., Ruiz-Herrera, A., Vives, L., Mele, M., Abello, T., Kondova, I., Bontrop, R.E., Pusey, A., Lankester, F., Kiyang, J.A., Bergl, R.A., Lonsdorf, E., Myers, S., Ventura, M., Gagneux, P., Comas, D., Siegismund, H., Blanc, J., Agueda-Calpena, L., Gut, M., Fulton, L., Tishkoff, S.A., Mullikin, J.C., Wilson, R.K., Gut, I.G., Gonder, M.K., Ryder, O.A., Hahn, B.H., Navarro, A., Akey, J.M., Bertranpetit, J., Reich, D., Mailund, T., Schierup M.H., Hvilsom, C., Andrés, A.M., Wall, J., Bustamante, C.D., Hammer, M., Eichler, E.E.+, Marques-Bonet, T+. (2013) Great ape genetic diversity and population history. Nature. doi:10.1038/nature12228. * and + contributed equally
  • Ségurel, L., Austerlitz, F., Toupance, B., Gautier, M., Kelley J.L., Pasquet P., Lonjou, C., Georges, M., Voisin, S., Cruaud, C., Couloux, A., Hegay, T., Aldashev, A., Vitalis, R.and E. Heyer. (2013) Positive selection of protective variants for type 2 diabetes from the Neolithic onward: a case study in Central Asia. European Journal of Human Genetics. doi:10.1038/ejhg.2012.295.
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Earlier publications