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Bioinformatics

At our genomics core facility, we are dedicated to providing state-of-the-art bioinformatics services that support the research efforts of researchers at WSU. Our team is committed to helping you access advanced tools and resources for genomic analysis, ensuring your work remains at the forefront of scientific discovery.

 

Standard Analyses

Our well-established pipelines enable rapid results and allow us to offer transparent per-sample pricing.

Data QC and Processing: sequencing quality evaluation, read trimming and filtering

RNA-Seq: gene and transcript quantitation followed by differential expression

De Novo Assembly: assemble sequencing data into longer contigs and scaffolds

Genomic Variant Analysis: SNP and small indel discovery, genotyping, structural variation detection

 

Custom Analyses

To discuss your unique project needs and explore potential collaborations, please reach out for a free consultation. We can partner with you for data analysis portions of grant applications, maximizing your chances of securing funding for groundbreaking research.

Examples of some custom analyses are provided below. As we develop our analysis infrastructure, these will become standard procedures with transparent costs per sample. For more specialized or customized pipelines, we offer rates of $70/hour. We would be pleased to provide time estimates or quotes following a consultation to determine your requirements.

Whole Exome Reseq: SNP and small indel discovery

Small RNA-Seq: microRNA expression quantitation, differential expression, novel microRNA prediction

Methylation Seq: methylation site calling and annotation

Metagenomics: sequence assembly, biodiversity analysis and bining, phylogenetic analysis

Gene Functional Annotation: gene ontology (GO) analysis, enrichment, pathway, etc.

 

Contact

Please contact us for a free consultation. We look forward to working with you on your analysis projects.

Phone: 509-368-6668

Email: Spok.GenomicsCore@wsu.edu

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