Here is a selection of our publications, with over 85 to date. Past and present lab members are shown in bold.

2020+    2019-2015   2014-2010   2009-2000

2024 (3 Peer Reviewed Manuscripts+)

  • Upadhaya, A., Upadhaya, S. G. C., Brueggeman, R. S. (2024). Identification of Candidate Avirulence and Virulence Genes Corresponding to Stem Rust (Puccinia graminis f. sp. tritici) Resistance Genes in Wheat. Molecular Plant-Microbe Interactions. DOI: 10.1094/MPMI-05-24-0056-R
  • Massman, C., Hernandez, J., Clare, S. J., Brooke, M., Filichkin, T., Fisk, S., Helgerson, L., Matny, O. N., del Blanco, I. A., Rouse, M. N., Steffenson, B. J., Bruggeman, B., Hayes, P. M. 2024. Registration of the “Woodies” multi-rust-resistant barley germplasm. J. Plant Regist. 1-9. DOI: 10.1002/plr2.20373
  • Preprint: Clare, S. J., Alhashel, A. F., Li, M., Effertz, K. M., Sharma Poudel, R., Zhang, J., Brueggeman, R. S. 2024. High resolution mapping of novel non-transgressive hybrid susceptibility in barley exploited by P. teres f. maculata maps to a single pentatricopeptide repeat-containing protein. BioRxiv. DOI: 10.1101/2024.03.17.585425
  • Richards, J., Li, J., Koladia, V., Wyatt, N., Rehman, S., Brueggeman, R. S., Friesen, T. L. 2024. A Moroccan Pyrenophora teres f. teres population defeats Rpt5, the broadly effective resistance on barley chromosome 6H. Phyopathology. DOI: 10.1094/PHYTO-04-23-0117-R

2023 (8)

  • Karki, M., Chu, C., Andersen, K., Nandety, R. S., Fielder, J., Schachterle, J., Brueggeman, R. S., Liu, Z., Yang S. 2023. Genome-wide association study of host resistance to Hessian fly in barley. Phytopathology. DOI: 10.1094/PHYTO-06-23-0192
  • Sharma Poudel, R., Belay, K., Nelson, B., Brueggeman, R. S., Underwood, W. 2023. Population and genome-wide association studies of Sclerotinia sclerotiorum isolates collected from diverse host plants throughout the United States. Front. Microbiol. 14. DOI: 10.3389/fmicb.2023.1251003
  • Ellur, V., Wei, W., Ghogare, R., Solanki, S., Vandemark, G., Brueggeman, R., Chen, W. 2023. Unraveling the genomic reorganization of polygalacturonase-inhibiting proteins in chickpea. Front. Genet. 14. DOI: 10.3389/fgene.2023.1189329
  • Preprint: Parajuli, A., Brueggeman, R., Wagner, S., Warburton, M., Peel, M., Yu, L., See, D, Zhang, Z. 2023. Linking Phenotypes to Protein Characteristics in 3D Structures Predicted by Alphafold. 2023051102. DOI: 10.20944/preprints202305.1102.v1
  • Preprint: Parajuli, A., Brueggeman, R., Wagner, S., Warburton, M., Peel, M., Yu, L., See, D, Zhang, Z. 2023. Bulked Target Capture Sequencing Identified Numerous Genetic Loci Associated with Alfalfa Growth Vigor During Inbreeding. 2023050898. DOI: 10.20944/preprints202305.0898.v1
  • Alhasel, A. F., Fielder, J. D., Nandety, R. S., Skiba, R., Brueggeman, R. S., Baldwin, T., Friesen, T. L., Yang. S. 2023. Genetic and physical localization of a major susceptibility gene to Pyrenophora teres f. maculata in barley. Theor. App. Genet. 136: 118. DOI: 10.1007/s00122-023-04367-1
  • Tang, Z., Wang, M., Schirrmann, M., Dammer, K-H., Li, X., Brueggeman, R., Sankaran, S., Carter, A.H., Pumphrey, M.O., Hu, Y., Chen, X., Zhang, X. 2023. Affordable High Throughput Field Detection of Wheat Stripe Rust Using Deep Learning with Semi-Automated Image Labeling. Computers and Electronics in Agriculture. 205: 107709. DOI: 10.1016/j.compag.2023.107709

Preprints. DOI: 10.20944/preprints202204.0177.v1.

  • Friskop, A., Halvorson, J., Hansen, B., Meyer, S., Jordahl, J., Gautam, P., Chapara, V., Arens, A., Tjelde, T., Kalil, A., Fonseka, D., Schatz, B., Brueggeman, R., Baldwin, T., Gross, P., Deplazes, C., Ransom, J. 2023. Effects of Fungicides and Cultivar Resistance on Fusarium Head Blight and Deoxynivalenol in Spring Barley from 2014 to 2019. Plant Health Progress. DOI: 10.1094/PHP-05-22-0045-RS
  • Craine, E., Choi, H., Schroeder, K. L., Brueggeman, R., Esser, A., Murphy, K. M. 2023. Spring barley malt quality in eastern Washington and northern Idaho. Crop Science. DOI: 10.1002/csc2.20924
  • Preprint: Li, J., Wyatt, N. A., Skiba, R. M., Kariyawasam, G. K., Richards, J. K., Effertz, K., Rehman, S., Brueggeman, R. S., Friesen, T. L. 2023. Pathogen genetics identifies avirulence/virulence loci associated with barley chromosome 6H resistance in the Pyrenophora teres f. teres–barley interaction. BioRxiv. DOI: 10.1101/2023.02.10.527674
  • Clare, S. J., Çelik Oğuz, A., Effertz, K., Karakaya, A., Azamparsa, M. R. and Brueggeman, R. S. 2023. Wild barley (Hordeum spontaneum) and landraces (Hordeum vulgare) from Turkey contain an abundance of novel Rhynchosporium commune resistance loci. Theor. App. Genet. 136: 15 DOI: 10.1007/s00122-023-04245-w

Research Square. DOI: 10.21203/

2022 (3)

  • Clare S. J., Duellman, K. M., Richards, J. K., Sharma Poudel, R., Merrick, L. F., Friesen, T. L., Brueggeman, R. S. 2022. Association mapping reveals a reciprocal virulence/avirulence locus within diverse US Pyrenophora teres f. maculata isolates. BMC Genomics. 23: 285. DOI: 10.1186/s12864-022-08529-1
  • Skiba, R.M., Wyatt, N. A., Kariyawasam, G. K., Fielder, J. D., Yang, S., Brueggeman, R. S., Friesen, T. L. 2022. Host and pathogen genetics reveal an inverse gene-for-gene association in the P. teres f. maculata-barley pathosystem. Theor. App. Genet. 135: 3597-3609. DOI: 10.1007/s00122-022-04204-x
  • Upadhaya, A., Upadhaya, S. G. C., Brueggeman, R. S. 2022. The wheat stem rust (Puccinia graminis f. sp. tritici) population from Washington contains the most virulent isolates reported on barley. Plant Disease. DOI: 10.1094/PDIS-06-21-1195-RE

2021 (6)

  • Ameen, G., Solanki, S., Sager-Brittara, L., Richards, J., Tamang, P., Friesen, T. L., Brueggeman. R. S. 2021. Mutations in a barley cytochrome P450 gene enhances pathogen induced programmed cell death and cutin layer instability. PLoS Genet. 17(12):e1009473. DOI: 10.1371/journal.pgen.1009473

bioRxiv. DOI: 10.1101/2021.03.09.434546

  • Book Chapter: Effertz, K., Clare, S. J., Harkins, S. M. and Brueggeman, R. S. 2021. Understanding plant-pathogen interactions in net blotch infection of cereals. In Achieving Durable Disease Resistance in Cereals, R. Oliver, ed. (Cambridge, UK: Burleigh Dodds Science Publishing Limited), pp. 1-36.
  • Clare, S. J., Çelik Oğuz, A., Effertz, K.Sharma Poudel, R., See, D.,  Karakaya, A., and Brueggeman, R. S. 2021. Genome-wide association mapping of Pyrenophora teres f. maculata and Pyrenophora teres f. teres resistance loci utilizing natural Turkish wild and landrace barley populations. G3. DOI: 10.1093/g3journal/jkab269

bioRxiv. DOI: 10.1101/2021.06.07.447398

  • Capo-chichi, L. J. A., Eldridge, S., Elakhdar, A., Kubo, T., Brueggeman, R., Aniya, A. O. 2021. QTL Mapping and Phenotypic Variation for Seedling Vigour Traits in Barley (Hordeum vulgare L.). Plants. 10 (6). DOI: 10.3390/plants10061149
  • Jin, Z., Solanki, S., Ameen, G., Gross, T., Sharma Poudel, R., Borowics, P., Brueggeman, R. S. and Schwars, P. 2021. Expansion of Internal Hyphal Growth in Fusarium Head Blight–Infected Grains Contributes to the Elevated Mycotoxin Production During the Malting Process. Molecular Plant-Microbe Interactions. DOI: 10.1094/MPMI-01-21-0024-R

↳ Localization of hyphal growth associated with mycotoxin production during the malting of Fusarium head blight infected grains. bioRxiv. DOI: 10.1101/2020.06.06.126979

  • Zhang, Z., Running, K.L.D., Seneviratne, S., Peters-Haugrud, A.R., Szabo‐Hever, A., Shi, G., Brueggeman, R., Xu, S. S., Friesen, T. L., Faris, J. D. 2021. A protein kinase–major sperm protein gene hijacked by a necrotrophic fungal pathogen triggers disease susceptibility in wheat. The Plant Journal. DOI: 10.1111/tpj.15194
  • Tamang, P., Richards, J. K., Solanki, S., Ameen, G., Sharma Poudel, R., Deka, P., Effertz, K., Clare, S., Hegsted, J., Bezbaruah, A. N., Li, X., Horsley, R. D. Friesen, T. L., Brueggeman, R. S. (2021). The barley HvWRKY6 transcription factor is required for resistance against Pyrenohpora teres f. teres. Frontiers in Genetics. DOI: 0.3389/fgene.2020.601500

2020 (7)

  • Book Chapter: Brueggeman, R. S., Solanki, S., Ameen, G., Effertz, K., Sharma Poudel, R. and Karakaya, A. (2020). Fungal diseases affecting barley. In Achieving Sustainable Cultivation of Barley, G. Fox, and C.Li, eds. (Cambridge, UK: Burleigh Dodds Science Publishing Limited), pp. 1–58.
  • Restrepo-Montoya, D., Brueggeman, R. S., McClean, P. and Osorno, J. M. 2020. Computational identification of receptor-like kinases “RLK” and receptor-like proteins “RLP” in legumes. BMC Genomics 21(1) DOI: 10.1186/s12864-020-6844-z.
  • Solanki, S., Ameen, G., Zhao, J., Flatten, J., Borowicz, P., and Brueggeman, R. S. 2020. Visualization of spatial gene expression in plants by modified RNAscope fluorescent in situ hybridization. Plant Methods 16(1) DOI: 10.1186/s13007-020-00614-4

bioRxiv. DOI: 10.1101/2020.04.01.020727

  • Preprint: Ameen, G., Solanki, S., Drader, T., Sager-Bittara, L., Steffenson, B., Kleinhofs, A., Vogiatzis, C., Brueggeman, R. S. 2020. rcs5-mediated spot blotch resistance in barley is conferred by wall-associated kinases that resist pathogen manipulation. bioRxiv. DOI: 10.1101/2020.04.13.040238
  • Book Chapter: Solanki, S., Ameen, G., Sanyal, D., Jain, S., Elakhdar, A., Lall, S., Chittem, K., Brueggeman, L., Kumar, A., Brueggeman, R. 2020. Friends and Foes: Phyto-Microbial Interactions in Molecular Perspective in Phyto-Microbiome in Stress Regulation.
  • Gyawali, S., Reda, A., Verma, R. P. S., Brueggeman, R. S., Rehman, S., Belqadi, L., Arbaoui, M., Tamang, P., and Singh, M. 2020. Seedling and adult stage resistance to net form of net blotch (NFNB) in spring barley and stability of adult stage resistance to NFNB in Morocco. Journal of Phytopathology. 168(39). DOI: 1111/jph.12887.
  • Sanyal, D., Solanki, S., Ameen, G., Brueggeman, R. S., and Chatterjee, A. 2020. Understanding the expression dynamics of symbiont rhizobial nifH and nitrogen assimilatory NR and GS genes in dry bean (Phaseolus vulgaris L.) genotypes at various growth stages. Legume Science. DOI: 10.1002/leg3.26
  • Aoun, M., Kolmer, J. A., Breiland, M., Richards, J., Brueggeman, R. S., Szabo, L. J. and Acevedo, M. 2020. Genotyping-by-Sequencing for the Study of Genetic Diversity in Puccinia triticina. Plant Disease 104(3). DOI:10.1094/PDIS-09-19-1890-RE
  • Clare, S., Wyatt, N., Brueggeman R. S., and Friesen, T. L. 2020. Research advances in the Pyrenophora teres–barley interaction. Molecular Plant Pathology 21(2): 272-288. DOI:10.1111/mpp.12896